PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001048.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 275aa    MW: 30502.4 Da    PI: 8.6446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001048.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.2e-105781126
                                    --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                    ykt+lC +f r G C+yG+ C +aHg
  FANhyb_rscf00001048.1.g00002.1 57 YKTRLCYNFKR-GRCHYGEACLYAHG 81
                                    9**********.*************9 PP

2zf-CCCH21.15.3e-07112136226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     + +lC+ f+  G C yG++C+F H+
  FANhyb_rscf00001048.1.g00002.1 112 GVKLCKMFSNQGRCEYGEKCRFRHV 136
                                     678*******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.4E-135287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-85487IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-55682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4325783IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-75781IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483111138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033112137IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4112136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5113136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7114135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSNSRSSCQF FTPFLKEGEE FGAVSDIEHH QAFKKPRISE VGSDSTMAGR RYRSLHYKTR  60
LCYNFKRGRC HYGEACLYAH GVEELRNTLG GSQNEKGVLG RTEYGNHGIC DGVKLCKMFS  120
NQGRCEYGEK CRFRHVILKR IKDDESVITI SAGGSEGSVD GGCGQFGGKR SLGLDVDTNG  180
GSGGRHFRQQ GSVAAGRGML SNTCIASGSF AHGHAVLRKL CGDTTVETKC SKTCTISREM  240
QVRDGKFDWN ELEKMSRIYA DWIEEIPLVH RKVQC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305323.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-13C3H family protein